J5_6Y6X_005
3D structure
- PDB id
- 6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Tetracenomycin X bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6Y6X|1|L5|G|3922, 6Y6X|1|L5|A|4376, 6Y6X|1|L5|G|4377, 6Y6X|1|L5|A|4378, 6Y6X|1|L5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6Y6X_005 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.3154
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Y6X|1|L5|U|3920
6Y6X|1|L5|U|3921
6Y6X|1|L5|G|3922
6Y6X|1|L5|A|3923
*
6Y6X|1|L5|U|4188
6Y6X|1|L5|U|4189
6Y6X|1|L5|U|4190
6Y6X|1|L5|G|4191
*
6Y6X|1|L5|C|4204
6Y6X|1|L5|A|4205
*
6Y6X|1|L5|U|4227
6Y6X|1|L5|G|4228
*
6Y6X|1|L5|C|4375
6Y6X|1|L5|A|4376
6Y6X|1|L5|G|4377
6Y6X|1|L5|A|4378
6Y6X|1|L5|A|4379
6Y6X|1|L5|A|4380
6Y6X|1|L5|A|4381
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
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