J5_6Y7C_001

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

6Y7C|1|2|A|541, 6Y7C|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|C|31
6Y7C|1|2|U|32
6Y7C|1|2|U|33
6Y7C|1|2|G|34
6Y7C|1|2|U|35
*
6Y7C|1|2|A|473
6Y7C|1|2|A|474
6Y7C|1|2|A|475
6Y7C|1|2|U|476
6Y7C|1|2|A|477
6Y7C|1|2|A|478
6Y7C|1|2|C|479
*
6Y7C|1|2|G|509
6Y7C|1|2|G|510
6Y7C|1|2|A|511
6Y7C|1|2|A|512
6Y7C|1|2|U|513
6Y7C|1|2|G|514
6Y7C|1|2|A|515
6Y7C|1|2|G|516
*
6Y7C|1|2|C|536
6Y7C|1|2|G|537
6Y7C|1|2|A|538
6Y7C|1|2|G|539
6Y7C|1|2|G|540
6Y7C|1|2|A|541
6Y7C|1|2|A|542
6Y7C|1|2|C|543
6Y7C|1|2|A|544
6Y7C|1|2|A|545
6Y7C|1|2|U|546
*
6Y7C|1|2|A|592
6Y7C|1|2|U|593
6Y7C|1|2|A|594
6Y7C|1|2|G|595

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain X

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S30-A

Chain t

Ribosome biogenesis protein TSR1