J5_6Y7C_002

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUGU*GCGAAUGGC*GAG*CAC*GGCAG

Length

25 nucleotides

Bulged bases

6Y7C|1|2|A|93, 6Y7C|1|2|C|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|C|54
6Y7C|1|2|A|55
6Y7C|1|2|U|56
6Y7C|1|2|G|57
6Y7C|1|2|U|58
*
6Y7C|1|2|G|89
6Y7C|1|2|C|90
6Y7C|1|2|G|91
6Y7C|1|2|A|92
6Y7C|1|2|A|93
6Y7C|1|2|U|94
6Y7C|1|2|G|95
6Y7C|1|2|G|96
6Y7C|1|2|C|97
*
6Y7C|1|2|G|386
6Y7C|1|2|A|387
6Y7C|1|2|G|388
*
6Y7C|1|2|C|409
6Y7C|1|2|A|410
6Y7C|1|2|C|411
*
6Y7C|1|2|G|422
6Y7C|1|2|G|423
6Y7C|1|2|C|424
6Y7C|1|2|A|425
6Y7C|1|2|G|426

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain G

40S ribosomal protein S6-A

Chain I

40S ribosomal protein S8-A

Chain J

40S ribosomal protein S9-A

Chain Y

40S ribosomal protein S24-A