J5_6Y7C_003

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

6Y7C|1|2|U|128, 6Y7C|1|2|C|130, 6Y7C|1|2|C|131, 6Y7C|1|2|U|132, 6Y7C|1|2|U|133, 6Y7C|1|2|U|134, 6Y7C|1|2|A|135, 6Y7C|1|2|C|136, 6Y7C|1|2|U|137, 6Y7C|1|2|A|140, 6Y7C|1|2|U|141, 6Y7C|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|A|124
6Y7C|1|2|U|125
6Y7C|1|2|A|126
6Y7C|1|2|G|127
6Y7C|1|2|U|128
6Y7C|1|2|U|129
6Y7C|1|2|C|130
6Y7C|1|2|C|131
6Y7C|1|2|U|132
6Y7C|1|2|U|133
6Y7C|1|2|U|134
6Y7C|1|2|A|135
6Y7C|1|2|C|136
6Y7C|1|2|U|137
6Y7C|1|2|A|138
6Y7C|1|2|C|139
6Y7C|1|2|A|140
6Y7C|1|2|U|141
6Y7C|1|2|G|142
6Y7C|1|2|G|143
*
6Y7C|1|2|C|172
6Y7C|1|2|A|173
6Y7C|1|2|U|174
6Y7C|1|2|G|175
6Y7C|1|2|C|176
6Y7C|1|2|U|177
6Y7C|1|2|U|178
6Y7C|1|2|A|179
6Y7C|1|2|A|180
6Y7C|1|2|A|181
6Y7C|1|2|A|182
*
6Y7C|1|2|U|203
6Y7C|1|2|G|204
*
6Y7C|1|2|C|263
6Y7C|1|2|G|264
6Y7C|1|2|A|265
*
6Y7C|1|2|U|289
6Y7C|1|2|G|290
6Y7C|1|2|G|291
6Y7C|1|2|U|292
6Y7C|1|2|U|293

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain G

40S ribosomal protein S6-A

Chain I

40S ribosomal protein S8-A