Loop J5_6Y7C

3D structure

PDB id: 6Y7C (explore in PDB, NAKB, or RNA 3D Hub)
Description: Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Loop

Sequence: ACUUUG*UUUCCUUCUG*CAGGACUUUU*AAUAGAAUAGG*UGAU
Length: 41 nucleotides
Bulged bases: 6Y7C|1|2|U|639, 6Y7C|1|2|U|694, 6Y7C|1|2|C|696, 6Y7C|1|2|C|697, 6Y7C|1|2|U|701, 6Y7C|1|2|C|741, 6Y7C|1|2|U|742, 6Y7C|1|2|G|810, 6Y7C|1|2|A|811
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6Y7C|1|2|A|636
6Y7C|1|2|C|637
6Y7C|1|2|U|638
6Y7C|1|2|U|639
6Y7C|1|2|U|640
6Y7C|1|2|G|641
*
6Y7C|1|2|U|693
6Y7C|1|2|U|694
6Y7C|1|2|U|695
6Y7C|1|2|C|696
6Y7C|1|2|C|697
6Y7C|1|2|U|698
6Y7C|1|2|U|699
6Y7C|1|2|C|700
6Y7C|1|2|U|701
6Y7C|1|2|G|702
*
6Y7C|1|2|C|736
6Y7C|1|2|A|737
6Y7C|1|2|G|738
6Y7C|1|2|G|739
6Y7C|1|2|A|740
6Y7C|1|2|C|741
6Y7C|1|2|U|742
6Y7C|1|2|U|743
6Y7C|1|2|U|744
6Y7C|1|2|U|745
*
6Y7C|1|2|A|806
6Y7C|1|2|A|807
6Y7C|1|2|U|808
6Y7C|1|2|A|809
6Y7C|1|2|G|810
6Y7C|1|2|A|811
6Y7C|1|2|A|812
6Y7C|1|2|U|813
6Y7C|1|2|A|814
6Y7C|1|2|G|815
6Y7C|1|2|G|816
*
6Y7C|1|2|U|857
6Y7C|1|2|G|858
6Y7C|1|2|A|859
6Y7C|1|2|U|860

Current chains

Chain 2: 20S ribosomal RNA

Nearby chains

Chain E: 40S ribosomal protein S4-A
Chain H: 40S ribosomal protein S7-A
Chain L: 40S ribosomal protein S11-A
Chain N: 40S ribosomal protein S13
Chain W: 40S ribosomal protein S22-A

J5_6Y7C_007