J5_6YAM_005

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

6YAM|1|2|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6YAM_005 not in the Motif Atlas

Homologous match to J5_8CRE_018

Geometric discrepancy: 0.1428

The information below is about J5_8CRE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_80702.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6YAM|1|2|C|30
6YAM|1|2|U|31
6YAM|1|2|U|32
6YAM|1|2|G|33
6YAM|1|2|U|34
*
6YAM|1|2|A|511
6YAM|1|2|A|512
6YAM|1|2|A|513
6YAM|1|2|U|514
6YAM|1|2|A|515
6YAM|1|2|A|516
6YAM|1|2|C|517
*
6YAM|1|2|G|548
6YAM|1|2|G|549
6YAM|1|2|A|550
6YAM|1|2|A|551
6YAM|1|2|U|552
6YAM|1|2|G|553
*
6YAM|1|2|C|582
6YAM|1|2|C|583
6YAM|1|2|A|584
6YAM|1|2|U|585
*
6YAM|1|2|A|631
6YAM|1|2|U|632
6YAM|1|2|A|633
6YAM|1|2|G|634

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein uS4

Chain Z

40S ribosomal protein uS12

Chain i

40S ribosomal protein eS30