J5_6YAN_004

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

6YAN|1|2|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6YAN_004 not in the Motif Atlas

Homologous match to J5_8CRE_018

Geometric discrepancy: 0.1523

The information below is about J5_8CRE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_80702.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6YAN|1|2|C|30
6YAN|1|2|U|31
6YAN|1|2|U|32
6YAN|1|2|G|33
6YAN|1|2|U|34
*
6YAN|1|2|A|511
6YAN|1|2|A|512
6YAN|1|2|A|513
6YAN|1|2|U|514
6YAN|1|2|A|515
6YAN|1|2|A|516
6YAN|1|2|C|517
*
6YAN|1|2|G|548
6YAN|1|2|G|549
6YAN|1|2|A|550
6YAN|1|2|A|551
6YAN|1|2|U|552
6YAN|1|2|G|553
*
6YAN|1|2|C|582
6YAN|1|2|C|583
6YAN|1|2|A|584
6YAN|1|2|U|585
*
6YAN|1|2|A|631
6YAN|1|2|U|632
6YAN|1|2|A|633
6YAN|1|2|G|634

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein S9 (Predicted)

Chain Z

40S ribosomal protein uS12

Chain i

40S ribosomal protein eS30