J5_6YDP_001
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAGAAAAAA*UACC*GUUG*CUAAU*AAGCAAUAAUG
- Length
- 34 nucleotides
- Bulged bases
- 6YDP|1|BA|A|205, 6YDP|1|BA|G|626, 6YDP|1|BA|U|633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YDP|1|BA|C|201
6YDP|1|BA|C|202
6YDP|1|BA|A|203
6YDP|1|BA|G|204
6YDP|1|BA|A|205
6YDP|1|BA|A|206
6YDP|1|BA|A|207
6YDP|1|BA|A|208
6YDP|1|BA|A|209
6YDP|1|BA|A|210
*
6YDP|1|BA|U|236
6YDP|1|BA|A|237
6YDP|1|BA|C|238
6YDP|1|BA|C|239
*
6YDP|1|BA|G|356
6YDP|1|BA|U|357
6YDP|1|BA|U|358
6YDP|1|BA|G|359
*
6YDP|1|BA|C|605
6YDP|1|BA|U|606
6YDP|1|BA|A|607
6YDP|1|BA|A|608
6YDP|1|BA|U|609
*
6YDP|1|BA|A|624
6YDP|1|BA|A|625
6YDP|1|BA|G|626
6YDP|1|BA|C|627
6YDP|1|BA|A|628
6YDP|1|BA|A|629
6YDP|1|BA|U|630
6YDP|1|BA|A|631
6YDP|1|BA|A|632
6YDP|1|BA|U|633
6YDP|1|BA|G|634
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B8
- Mitochondrial ribosomal protein L35
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BP
- uL15m
- Chain BU
- Mitochondrial ribosomal protein L20
- Chain BV
- Mitochondrial ribosomal protein L21
- Chain Bg
- Mitochondrial ribosomal protein L43
- Chain Bh
- mL44
- Chain Bl
- Mrpl34
- Chain Bn
- Mitochondrial ribosomal protein L51
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