J5_6YDP_002
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAAGACC*GGAUAACA*UCGAUGUU*AGUUCAG*CGGUUU
- Length
- 37 nucleotides
- Bulged bases
- 6YDP|1|BA|A|1057, 6YDP|1|BA|A|1271, 6YDP|1|BA|U|1272, 6YDP|1|BA|U|1432, 6YDP|1|BA|U|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YDP|1|BA|A|1052
6YDP|1|BA|G|1053
6YDP|1|BA|A|1054
6YDP|1|BA|A|1055
6YDP|1|BA|G|1056
6YDP|1|BA|A|1057
6YDP|1|BA|C|1058
6YDP|1|BA|C|1059
*
6YDP|1|BA|G|1269
6YDP|1|BA|G|1270
6YDP|1|BA|A|1271
6YDP|1|BA|U|1272
6YDP|1|BA|A|1273
6YDP|1|BA|A|1274
6YDP|1|BA|C|1275
6YDP|1|BA|A|1276
*
6YDP|1|BA|U|1323
6YDP|1|BA|C|1324
6YDP|1|BA|G|1325
6YDP|1|BA|A|1326
6YDP|1|BA|U|1327
6YDP|1|BA|G|1328
6YDP|1|BA|U|1329
6YDP|1|BA|U|1330
*
6YDP|1|BA|A|1405
6YDP|1|BA|G|1406
6YDP|1|BA|U|1407
6YDP|1|BA|U|1408
6YDP|1|BA|C|1409
6YDP|1|BA|A|1410
6YDP|1|BA|G|1411
*
6YDP|1|BA|C|1429
6YDP|1|BA|G|1430
6YDP|1|BA|G|1431
6YDP|1|BA|U|1432
6YDP|1|BA|U|1433
6YDP|1|BA|U|1434
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain AV
- fMet-tRNAMet (P site)
- Chain B5
- bL32m
- Chain BE
- ICT1
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BP
- uL15m
- Chain BQ
- uL16m
- Chain BW
- uL22m
- Chain Bi
- Mitochondrial ribosomal protein L45
Coloring options: