J5_6YEF_001

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

6YEF|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6YEF_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.0922

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6YEF|1|A|C|47
6YEF|1|A|G|48
6YEF|1|A|A|49
6YEF|1|A|U|50
6YEF|1|A|G|51
6YEF|1|A|A|52
6YEF|1|A|A|53
6YEF|1|A|G|54
*
6YEF|1|A|C|115
6YEF|1|A|G|116
6YEF|1|A|A|117
6YEF|1|A|A|118
6YEF|1|A|U|119
6YEF|1|A|G|120
*
6YEF|1|A|C|129
6YEF|1|A|A|130
*
6YEF|1|A|U|149
6YEF|1|A|A|150
6YEF|1|A|U|151
*
6YEF|1|A|A|178
6YEF|1|A|A|179
6YEF|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34