J5_6YHS_006
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6YHS|1|1|U|2065, 6YHS|1|1|G|2417, 6YHS|1|1|G|2418, 6YHS|1|1|A|2419, 6YHS|1|1|U|2420
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6YHS_006 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.0813
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YHS|1|1|U|2063
6YHS|1|1|U|2064
6YHS|1|1|U|2065
6YHS|1|1|A|2066
*
6YHS|1|1|U|2232
6YHS|1|1|U|2233
6YHS|1|1|U|2234
6YHS|1|1|G|2235
*
6YHS|1|1|C|2247
6YHS|1|1|U|2248
*
6YHS|1|1|A|2270
6YHS|1|1|G|2271
*
6YHS|1|1|C|2416
6YHS|1|1|G|2417
6YHS|1|1|G|2418
6YHS|1|1|A|2419
6YHS|1|1|U|2420
6YHS|1|1|A|2421
6YHS|1|1|A|2422
6YHS|1|1|A|2423
6YHS|1|1|A|2424
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain A
- 50S ribosomal protein L2
- Chain H
- 50S ribosomal protein L15
- Chain S
- 50S ribosomal protein L27
- Chain T
- 50S ribosomal protein L28
- Chain a
- 50S ribosomal protein L35
Coloring options: