J5_6YLG_004
3D structure
- PDB id
- 6YLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6YLG|1|1|G|2116, 6YLG|1|1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6YLG_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0956
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YLG|1|1|G|1906
6YLG|1|1|C|1907
6YLG|1|1|A|1908
6YLG|1|1|A|1909
6YLG|1|1|A|1910
6YLG|1|1|A|1911
6YLG|1|1|U|1912
6YLG|1|1|A|1913
6YLG|1|1|G|1914
*
6YLG|1|1|U|1938
6YLG|1|1|G|1939
*
6YLG|1|1|U|2109
6YLG|1|1|G|2110
*
6YLG|1|1|C|2114
6YLG|1|1|G|2115
6YLG|1|1|G|2116
6YLG|1|1|A|2117
6YLG|1|1|C|2118
6YLG|1|1|A|2119
6YLG|1|1|A|2120
6YLG|1|1|G|2121
6YLG|1|1|G|2122
*
6YLG|1|1|C|2331
6YLG|1|1|A|2332
6YLG|1|1|C|2333
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain I
- Bud site selection protein 20
- Chain R
- 60S ribosomal protein L19-A
- Chain V
- 60S ribosomal protein L23-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain u
- Ribosome biogenesis protein RLP24
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