J5_6YLY_006
3D structure
- PDB id
- 6YLY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE2 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGUCGGCAAAAUAG*UG*UG*CGGACAAGG*CACUGU
- Length
- 33 nucleotides
- Bulged bases
- 6YLY|1|1|G|2116, 6YLY|1|1|G|2121, 6YLY|1|1|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YLY|1|1|A|1901
6YLY|1|1|G|1902
6YLY|1|1|U|1903
6YLY|1|1|C|1904
6YLY|1|1|G|1905
6YLY|1|1|G|1906
6YLY|1|1|C|1907
6YLY|1|1|A|1908
6YLY|1|1|A|1909
6YLY|1|1|A|1910
6YLY|1|1|A|1911
6YLY|1|1|U|1912
6YLY|1|1|A|1913
6YLY|1|1|G|1914
*
6YLY|1|1|U|1938
6YLY|1|1|G|1939
*
6YLY|1|1|U|2109
6YLY|1|1|G|2110
*
6YLY|1|1|C|2114
6YLY|1|1|G|2115
6YLY|1|1|G|2116
6YLY|1|1|A|2117
6YLY|1|1|C|2118
6YLY|1|1|A|2119
6YLY|1|1|A|2120
6YLY|1|1|G|2121
6YLY|1|1|G|2122
*
6YLY|1|1|C|2331
6YLY|1|1|A|2332
6YLY|1|1|C|2333
6YLY|1|1|U|2334
6YLY|1|1|G|2335
6YLY|1|1|U|2336
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain I
- Bud site selection protein 20
- Chain R
- 60S ribosomal protein L19-A
- Chain V
- 60S ribosomal protein L23-A
- Chain u
- Ribosome biogenesis protein RLP24
Coloring options: