J5_6YPU_001

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGG*CGUG*CUUUAAG*CAGAAUAAG*CGAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6YPU_001 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0977

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6YPU|1|2|C|38
6YPU|1|2|U|39
6YPU|1|2|G|40
6YPU|1|2|G|41
*
6YPU|1|2|C|399
6YPU|1|2|G|400
6YPU|1|2|U|401
6YPU|1|2|G|402
*
6YPU|1|2|C|432
6YPU|1|2|U|433
6YPU|1|2|U|434
6YPU|1|2|U|435
6YPU|1|2|A|436
6YPU|1|2|A|437
6YPU|1|2|G|438
*
6YPU|1|2|C|489
6YPU|1|2|A|490
6YPU|1|2|G|491
6YPU|1|2|A|492
6YPU|1|2|A|493
6YPU|1|2|U|494
6YPU|1|2|A|495
6YPU|1|2|A|496
6YPU|1|2|G|497
*
6YPU|1|2|C|542
6YPU|1|2|G|543
6YPU|1|2|A|544
6YPU|1|2|G|545

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain m

30S ribosomal protein S12