J5_6YS3_002
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 6YS3|1|b|A|532, 6YS3|1|b|U|564
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6YS3_002 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0602
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YS3|1|b|C|531
6YS3|1|b|A|532
6YS3|1|b|G|533
*
6YS3|1|b|C|562
6YS3|1|b|G|563
6YS3|1|b|U|564
6YS3|1|b|A|565
6YS3|1|b|C|566
*
6YS3|1|b|G|579
6YS3|1|b|G|580
6YS3|1|b|G|581
*
6YS3|1|b|C|1263
6YS3|1|b|A|1264
*
6YS3|1|b|U|2021
6YS3|1|b|G|2022
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain e
- 50S ribosomal protein L4
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
- Chain s
- 50S ribosomal protein L22
- Chain z
- Gamma-crystallin B
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