J5_6YSI_002
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CG*CG
- Length
- 15 nucleotides
- Bulged bases
- 6YSI|1|1|A|524, 6YSI|1|1|U|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6YSI_002 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0552
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YSI|1|1|C|523
6YSI|1|1|A|524
6YSI|1|1|G|525
*
6YSI|1|1|C|551
6YSI|1|1|G|552
6YSI|1|1|U|553
6YSI|1|1|A|554
6YSI|1|1|C|555
*
6YSI|1|1|G|568
6YSI|1|1|G|569
6YSI|1|1|G|570
*
6YSI|1|1|C|1249
6YSI|1|1|G|1250
*
6YSI|1|1|C|2006
6YSI|1|1|G|2007
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain M
- 50S ribosomal protein L20
- Chain N
- 50S ribosomal protein L21
- Chain O
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L32
Coloring options: