J5_6YSI_004
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GCAAAAUGG*CG*CC*GAAACCAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 6YSI|1|1|A|1747, 6YSI|1|1|G|1752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6YSI_004 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.1147
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YSI|1|1|G|1665
6YSI|1|1|C|1666
6YSI|1|1|A|1667
6YSI|1|1|A|1668
6YSI|1|1|A|1669
6YSI|1|1|A|1670
6YSI|1|1|U|1671
6YSI|1|1|G|1672
6YSI|1|1|G|1673
*
6YSI|1|1|C|1697
6YSI|1|1|G|1698
*
6YSI|1|1|C|1740
6YSI|1|1|C|1741
*
6YSI|1|1|G|1745
6YSI|1|1|A|1746
6YSI|1|1|A|1747
6YSI|1|1|A|1748
6YSI|1|1|C|1749
6YSI|1|1|C|1750
6YSI|1|1|A|1751
6YSI|1|1|G|1752
6YSI|1|1|G|1753
*
6YSI|1|1|C|1977
6YSI|1|1|G|1978
6YSI|1|1|C|1979
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L14
- Chain L
- 50S ribosomal protein L19
Coloring options: