3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
6YST|1|a|A|109, 6YST|1|a|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6YST_009 not in the Motif Atlas
Homologous match to J5_6CZR_021
Geometric discrepancy: 0.132
The information below is about J5_6CZR_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.5
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6YST|1|a|C|58
6YST|1|a|A|59
6YST|1|a|A|60
6YST|1|a|G|61
*
6YST|1|a|C|106
6YST|1|a|G|107
6YST|1|a|G|108
6YST|1|a|A|109
6YST|1|a|C|110
6YST|1|a|G|111
6YST|1|a|G|112
6YST|1|a|G|113
*
6YST|1|a|C|314
6YST|1|a|A|315
6YST|1|a|C|316
*
6YST|1|a|G|337
6YST|1|a|A|338
6YST|1|a|C|339
*
6YST|1|a|G|350
6YST|1|a|G|351
6YST|1|a|C|352
6YST|1|a|A|353
6YST|1|a|G|354

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19
Chain p
30S ribosomal protein S16
Chain t
30S ribosomal protein S20

Coloring options:


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