J5_6Z1P_001
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 6Z1P|1|Ab|A|429, 6Z1P|1|Ab|U|453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6Z1P_001 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.1303
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6Z1P|1|Ab|C|428
6Z1P|1|Ab|A|429
6Z1P|1|Ab|G|430
*
6Z1P|1|Ab|C|451
6Z1P|1|Ab|G|452
6Z1P|1|Ab|U|453
6Z1P|1|Ab|A|454
6Z1P|1|Ab|C|455
*
6Z1P|1|Ab|G|468
6Z1P|1|Ab|G|469
6Z1P|1|Ab|G|470
*
6Z1P|1|Ab|C|1136
6Z1P|1|Ab|A|1137
*
6Z1P|1|Ab|U|1736
6Z1P|1|Ab|G|1737
Current chains
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain AD
- bL32m
- Chain Aa
- LSU rRNA_1
- Chain Ae
- 50S ribosomal protein L4
- Chain Ao
- 50S ribosomal protein L13
- Chain Au
- 50S ribosomal protein L20
- Chain Av
- 50S ribosomal protein L21
- Chain Aw
- Ribosomal protein L22/L17e
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