3D structure

PDB id
6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CAUG*CGAAUGGC*GAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
6Z6J|1|C2|U|56, 6Z6J|1|C2|A|93, 6Z6J|1|C2|C|424
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6Z6J_008 not in the Motif Atlas
Homologous match to J5_8C3A_020
Geometric discrepancy: 0.0731
The information below is about J5_8C3A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.4
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6Z6J|1|C2|C|54
6Z6J|1|C2|A|55
6Z6J|1|C2|U|56
6Z6J|1|C2|G|57
*
6Z6J|1|C2|C|90
6Z6J|1|C2|G|91
6Z6J|1|C2|A|92
6Z6J|1|C2|A|93
6Z6J|1|C2|U|94
6Z6J|1|C2|G|95
6Z6J|1|C2|G|96
6Z6J|1|C2|C|97
*
6Z6J|1|C2|G|386
6Z6J|1|C2|A|387
6Z6J|1|C2|G|388
*
6Z6J|1|C2|C|409
6Z6J|1|C2|A|410
6Z6J|1|C2|C|411
*
6Z6J|1|C2|G|422
6Z6J|1|C2|G|423
6Z6J|1|C2|C|424
6Z6J|1|C2|A|425
6Z6J|1|C2|G|426

Current chains

Chain C2
18S rRNA

Nearby chains

Chain LV
60S ribosomal protein L23-A
Chain SE
40S ribosomal protein S4-A
Chain SG
40S ribosomal protein S6-A
Chain SI
40S ribosomal protein S8-A
Chain SJ
40S ribosomal protein S9-A
Chain SY
40S ribosomal protein S24-A

Coloring options:


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