J5_6ZCE_001

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

6ZCE|1|A|A|538, 6ZCE|1|A|A|541, 6ZCE|1|A|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZCE|1|A|C|31
6ZCE|1|A|U|32
6ZCE|1|A|U|33
6ZCE|1|A|G|34
6ZCE|1|A|U|35
*
6ZCE|1|A|A|473
6ZCE|1|A|A|474
6ZCE|1|A|A|475
6ZCE|1|A|U|476
6ZCE|1|A|A|477
6ZCE|1|A|A|478
6ZCE|1|A|C|479
*
6ZCE|1|A|G|509
6ZCE|1|A|G|510
6ZCE|1|A|A|511
6ZCE|1|A|A|512
6ZCE|1|A|U|513
6ZCE|1|A|G|514
6ZCE|1|A|A|515
6ZCE|1|A|G|516
*
6ZCE|1|A|C|536
6ZCE|1|A|G|537
6ZCE|1|A|A|538
6ZCE|1|A|G|539
6ZCE|1|A|G|540
6ZCE|1|A|A|541
6ZCE|1|A|A|542
6ZCE|1|A|C|543
6ZCE|1|A|A|544
6ZCE|1|A|A|545
6ZCE|1|A|U|546
*
6ZCE|1|A|A|592
6ZCE|1|A|U|593
6ZCE|1|A|A|594
6ZCE|1|A|G|595

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain K

40S ribosomal protein S9-A

Chain Y

40S ribosomal protein S23-A

Chain f

40S ribosomal protein S30-A

Chain p

Eukaryotic translation initiation factor 3 subunit B

Chain s

Eukaryotic translation initiation factor 3 subunit J