J5_6ZJ3_003
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GCAAACUGG*UG*UG*(OMC)UG(OMU)GCAG(OMG)*UGC
- Length
- 25 nucleotides
- Bulged bases
- 6ZJ3|1|LH|G|2604, 6ZJ3|1|LH|G|2609
- QA status
- Modified nucleotides: OMC, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ZJ3_003 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.1502
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6ZJ3|1|LH|G|2364
6ZJ3|1|LH|C|2365
6ZJ3|1|LH|A|2366
6ZJ3|1|LH|A|2367
6ZJ3|1|LH|A|2368
6ZJ3|1|LH|C|2369
6ZJ3|1|LH|U|2370
6ZJ3|1|LH|G|2371
6ZJ3|1|LH|G|2372
*
6ZJ3|1|LH|U|2396
6ZJ3|1|LH|G|2397
*
6ZJ3|1|LH|U|2597
6ZJ3|1|LH|G|2598
*
6ZJ3|1|LH|OMC|2602
6ZJ3|1|LH|U|2603
6ZJ3|1|LH|G|2604
6ZJ3|1|LH|OMU|2605
6ZJ3|1|LH|G|2606
6ZJ3|1|LH|C|2607
6ZJ3|1|LH|A|2608
6ZJ3|1|LH|G|2609
6ZJ3|1|LH|OMG|2610
*
6ZJ3|1|LH|U|2819
6ZJ3|1|LH|G|2820
6ZJ3|1|LH|C|2821
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- LSU rRNA chain 12
- Chain LN
- LSU rRNA chain 13
- Chain LQ
- Ribosomal protein uL3
- Chain LY
- Ribosomal protein uL14
- Chain Lf
- Ribosomal protein eL19
- Chain Lm
- Ribosomal protein eL24
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
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