J5_6ZJ3_005
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- (B8H)UGA*UU(PSU)G*CG*(OMC)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6ZJ3|1|LH|G|2906, 6ZJ3|1|LI|A|3385, 6ZJ3|1|LI|G|3386, 6ZJ3|1|LI|A|3387, 6ZJ3|1|LI|A|3388
- QA status
- Modified nucleotides: B8H, PSU, OMC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ZJ3_005 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.3093
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LH|B8H|2904
6ZJ3|1|LH|U|2905
6ZJ3|1|LH|G|2906
6ZJ3|1|LH|A|2907
*
6ZJ3|1|LI|U|3183
6ZJ3|1|LI|U|3184
6ZJ3|1|LI|PSU|3185
6ZJ3|1|LI|G|3186
*
6ZJ3|1|LI|C|3199
6ZJ3|1|LI|G|3200
*
6ZJ3|1|LI|OMC|3222
6ZJ3|1|LI|OMG|3223
*
6ZJ3|1|LI|C|3384
6ZJ3|1|LI|A|3385
6ZJ3|1|LI|G|3386
6ZJ3|1|LI|A|3387
6ZJ3|1|LI|A|3388
6ZJ3|1|LI|A|3389
6ZJ3|1|LI|A|3390
Current chains
- Chain LH
- LSU rRNA chain 7
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain L4
- Ribosomal protein eL43
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain La
- Ribosomal protein uL15
- Chain Lb
- Ribosomal protein eL15
- Chain Le
- Ribosomal protein eL18
- Chain Lq
- Ribosomal protein eL29
- Chain S4
- Transfer RNA; tRNA
Coloring options: