J5_6ZJ3_008
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CAC(OMG)*(PSU)GAAUGGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6ZJ3|1|S1|C|56, 6ZJ3|1|S1|A|92, 6ZJ3|1|S1|C|521
- QA status
- Modified nucleotides: OMG, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ZJ3_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1408
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZJ3|1|S1|C|54
6ZJ3|1|S1|A|55
6ZJ3|1|S1|C|56
6ZJ3|1|S1|OMG|57
*
6ZJ3|1|S1|PSU|89
6ZJ3|1|S1|G|90
6ZJ3|1|S1|A|91
6ZJ3|1|S1|A|92
6ZJ3|1|S1|U|93
6ZJ3|1|S1|G|94
6ZJ3|1|S1|G|95
6ZJ3|1|S1|C|96
*
6ZJ3|1|S1|G|483
6ZJ3|1|S1|A|484
6ZJ3|1|S1|OMG|485
*
6ZJ3|1|S1|C|506
6ZJ3|1|S1|A|507
6ZJ3|1|S1|C|508
*
6ZJ3|1|S1|G|519
6ZJ3|1|S1|G|520
6ZJ3|1|S1|C|521
6ZJ3|1|S1|A|522
6ZJ3|1|S1|G|523
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain LY
- Ribosomal protein uL14
- Chain Lm
- Ribosomal protein eL24
- Chain SD
- Ribosomal protein uS4
- Chain SE
- Ribosomal protein eS4
- Chain SG
- Ribosomal protein eS6
- Chain SK
- Ribosomal protein eS8
- Chain SZ
- Ribosomal protein eS24
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