J5_6ZM7_002
3D structure
- PDB id
- 6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 6ZM7|1|L5|C|2289, 6ZM7|1|L5|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ZM7_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0587
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZM7|1|L5|G|1335
6ZM7|1|L5|G|1336
6ZM7|1|L5|A|1337
6ZM7|1|L5|G|1338
6ZM7|1|L5|U|1339
6ZM7|1|L5|C|1340
*
6ZM7|1|L5|G|1516
6ZM7|1|L5|G|1517
6ZM7|1|L5|A|1518
6ZM7|1|L5|C|1519
*
6ZM7|1|L5|G|1658
6ZM7|1|L5|U|1659
6ZM7|1|L5|U|1660
6ZM7|1|L5|C|1661
*
6ZM7|1|L5|G|2288
6ZM7|1|L5|C|2289
6ZM7|1|L5|C|2290
*
6ZM7|1|L5|G|2345
6ZM7|1|L5|C|2346
6ZM7|1|L5|A|2347
6ZM7|1|L5|G|2348
6ZM7|1|L5|A|2349
6ZM7|1|L5|U|2350
6ZM7|1|L5|C|2351
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Le
- 60S ribosomal protein L32
- Chain Lr
- 60S ribosomal protein L28
Coloring options: