J5_6ZN5_004

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGCUCG*CGGG*UG*CCG*CGA

Length

19 nucleotides

Bulged bases

6ZN5|1|2|G|126, 6ZN5|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZN5|1|2|U|124
6ZN5|1|2|C|125
6ZN5|1|2|G|126
6ZN5|1|2|C|127
6ZN5|1|2|U|128
6ZN5|1|2|C|129
6ZN5|1|2|G|130
*
6ZN5|1|2|C|182
6ZN5|1|2|G|183
6ZN5|1|2|G|184
6ZN5|1|2|G|185
*
6ZN5|1|2|U|214
6ZN5|1|2|G|215
*
6ZN5|1|2|C|310
6ZN5|1|2|C|311
6ZN5|1|2|G|312
*
6ZN5|1|2|C|337
6ZN5|1|2|G|338
6ZN5|1|2|A|339

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8