J5_6ZON_002

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZON|1|2|C|30
6ZON|1|2|U|31
6ZON|1|2|U|32
6ZON|1|2|G|33
6ZON|1|2|U|34
*
6ZON|1|2|A|521
6ZON|1|2|A|522
6ZON|1|2|A|523
6ZON|1|2|U|524
6ZON|1|2|A|525
6ZON|1|2|A|526
6ZON|1|2|C|527
*
6ZON|1|2|G|558
6ZON|1|2|G|559
6ZON|1|2|A|560
6ZON|1|2|A|561
6ZON|1|2|U|562
6ZON|1|2|G|563
6ZON|1|2|A|564
6ZON|1|2|G|565
*
6ZON|1|2|C|585
6ZON|1|2|G|586
6ZON|1|2|A|587
6ZON|1|2|G|588
6ZON|1|2|G|589
6ZON|1|2|A|590
6ZON|1|2|U|591
6ZON|1|2|C|592
6ZON|1|2|C|593
6ZON|1|2|A|594
6ZON|1|2|U|595
*
6ZON|1|2|A|641
6ZON|1|2|U|642
6ZON|1|2|A|643
6ZON|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Eukaryotic translation initiation factor 3 subunit B

Chain T

40S ribosomal protein S30

Chain c

40S ribosomal protein S9

Chain j

40S ribosomal protein S23