J5_6ZON_004

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

6ZON|1|2|G|126, 6ZON|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZON|1|2|G|123
6ZON|1|2|U|124
6ZON|1|2|C|125
6ZON|1|2|G|126
6ZON|1|2|C|127
6ZON|1|2|U|128
6ZON|1|2|C|129
*
6ZON|1|2|G|183
6ZON|1|2|G|184
6ZON|1|2|G|185
*
6ZON|1|2|U|214
6ZON|1|2|G|215
*
6ZON|1|2|C|310
6ZON|1|2|C|311
6ZON|1|2|G|312
*
6ZON|1|2|C|337
6ZON|1|2|G|338
6ZON|1|2|A|339
6ZON|1|2|C|340
6ZON|1|2|C|341

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain q

40S ribosomal protein S4, X isoform

Chain r

40S ribosomal protein S6

Chain t

40S ribosomal protein S8