J5_6ZQB_004

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUUGU*AAAUAAC*GGAAUG*CAAU*AUAGC

Length

28 nucleotides

Bulged bases

6ZQB|1|D3|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQB|1|D3|G|30
6ZQB|1|D3|C|31
6ZQB|1|D3|U|32
6ZQB|1|D3|U|33
6ZQB|1|D3|G|34
6ZQB|1|D3|U|35
*
6ZQB|1|D3|A|473
6ZQB|1|D3|A|474
6ZQB|1|D3|A|475
6ZQB|1|D3|U|476
6ZQB|1|D3|A|477
6ZQB|1|D3|A|478
6ZQB|1|D3|C|479
*
6ZQB|1|D3|G|509
6ZQB|1|D3|G|510
6ZQB|1|D3|A|511
6ZQB|1|D3|A|512
6ZQB|1|D3|U|513
6ZQB|1|D3|G|514
*
6ZQB|1|D3|C|543
6ZQB|1|D3|A|544
6ZQB|1|D3|A|545
6ZQB|1|D3|U|546
*
6ZQB|1|D3|A|592
6ZQB|1|D3|U|593
6ZQB|1|D3|A|594
6ZQB|1|D3|G|595
6ZQB|1|D3|C|596

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DJ

40S ribosomal protein S9-A

Chain DX

40S ribosomal protein S23-A

Chain JE

U3 small nucleolar ribonucleoprotein protein LCP5

Chain UC

Something about silencing protein 10