J5_6ZQC_004
3D structure
- PDB id
- 6ZQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6ZQC|1|D3|A|93, 6ZQC|1|D3|A|425
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ZQC_004 not in the Motif Atlas
- Homologous match to J5_8CRE_020
- Geometric discrepancy: 0.5064
- The information below is about J5_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZQC|1|D3|C|54
6ZQC|1|D3|A|55
6ZQC|1|D3|U|56
6ZQC|1|D3|G|57
*
6ZQC|1|D3|C|90
6ZQC|1|D3|G|91
6ZQC|1|D3|A|92
6ZQC|1|D3|A|93
6ZQC|1|D3|U|94
6ZQC|1|D3|G|95
6ZQC|1|D3|G|96
6ZQC|1|D3|C|97
*
6ZQC|1|D3|G|386
6ZQC|1|D3|A|387
6ZQC|1|D3|G|388
*
6ZQC|1|D3|C|409
6ZQC|1|D3|A|410
6ZQC|1|D3|C|411
*
6ZQC|1|D3|G|422
6ZQC|1|D3|G|423
6ZQC|1|D3|C|424
6ZQC|1|D3|A|425
6ZQC|1|D3|G|426
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DE
- 40S ribosomal protein S4-A
- Chain DG
- 40S ribosomal protein S6-A
- Chain DI
- 40S ribosomal protein S8-A
- Chain DJ
- 40S ribosomal protein S9-A
- Chain DY
- 40S ribosomal protein S24-A
- Chain JA
- RNA cytidine acetyltransferase
- Chain JC
- Ribosome biogenesis protein ENP2
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