J5_6ZQE_001

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CUUGUCU*AUAAAUAACG*UGGAAUGAG*CGAGGAACAAU*AUAG

Length

41 nucleotides

Bulged bases

6ZQE|1|D3|A|541, 6ZQE|1|D3|C|543, 6ZQE|1|D3|A|544, 6ZQE|1|D3|A|594

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQE|1|D3|C|31
6ZQE|1|D3|U|32
6ZQE|1|D3|U|33
6ZQE|1|D3|G|34
6ZQE|1|D3|U|35
6ZQE|1|D3|C|36
6ZQE|1|D3|U|37
*
6ZQE|1|D3|A|471
6ZQE|1|D3|U|472
6ZQE|1|D3|A|473
6ZQE|1|D3|A|474
6ZQE|1|D3|A|475
6ZQE|1|D3|U|476
6ZQE|1|D3|A|477
6ZQE|1|D3|A|478
6ZQE|1|D3|C|479
6ZQE|1|D3|G|480
*
6ZQE|1|D3|U|508
6ZQE|1|D3|G|509
6ZQE|1|D3|G|510
6ZQE|1|D3|A|511
6ZQE|1|D3|A|512
6ZQE|1|D3|U|513
6ZQE|1|D3|G|514
6ZQE|1|D3|A|515
6ZQE|1|D3|G|516
*
6ZQE|1|D3|C|536
6ZQE|1|D3|G|537
6ZQE|1|D3|A|538
6ZQE|1|D3|G|539
6ZQE|1|D3|G|540
6ZQE|1|D3|A|541
6ZQE|1|D3|A|542
6ZQE|1|D3|C|543
6ZQE|1|D3|A|544
6ZQE|1|D3|A|545
6ZQE|1|D3|U|546
*
6ZQE|1|D3|A|592
6ZQE|1|D3|U|593
6ZQE|1|D3|A|594
6ZQE|1|D3|G|595

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DJ

40S ribosomal protein S9-A

Chain DX

40S ribosomal protein S23-A

Chain UC

Something about silencing protein 10