J5_6ZQE_005

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

6ZQE|1|D3|U|694, 6ZQE|1|D3|C|696, 6ZQE|1|D3|C|697, 6ZQE|1|D3|U|813, 6ZQE|1|D3|G|815, 6ZQE|1|D3|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQE|1|D3|A|636
6ZQE|1|D3|C|637
6ZQE|1|D3|U|638
6ZQE|1|D3|U|639
6ZQE|1|D3|U|640
6ZQE|1|D3|G|641
*
6ZQE|1|D3|U|693
6ZQE|1|D3|U|694
6ZQE|1|D3|U|695
6ZQE|1|D3|C|696
6ZQE|1|D3|C|697
6ZQE|1|D3|U|698
6ZQE|1|D3|U|699
*
6ZQE|1|D3|G|739
6ZQE|1|D3|A|740
6ZQE|1|D3|C|741
6ZQE|1|D3|U|742
6ZQE|1|D3|U|743
6ZQE|1|D3|U|744
*
6ZQE|1|D3|A|807
6ZQE|1|D3|U|808
6ZQE|1|D3|A|809
6ZQE|1|D3|G|810
6ZQE|1|D3|A|811
6ZQE|1|D3|A|812
6ZQE|1|D3|U|813
6ZQE|1|D3|A|814
6ZQE|1|D3|G|815
6ZQE|1|D3|G|816
6ZQE|1|D3|A|817
*
6ZQE|1|D3|U|854
6ZQE|1|D3|A|855
6ZQE|1|D3|A|856
6ZQE|1|D3|U|857
6ZQE|1|D3|G|858
6ZQE|1|D3|A|859
6ZQE|1|D3|U|860

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DH

40S ribosomal protein S7-A

Chain DL

40S ribosomal protein S11-A

Chain DN

40S ribosomal protein S13

Chain DW

40S ribosomal protein S22-A