Loop J5_6ZQF

3D structure

PDB id: 6ZQF (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.9 Å

Loop

Sequence: CUUGUCUCAAA*UGACAAUAAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
Length: 48 nucleotides
Bulged bases: 6ZQF|1|D3|G|467, 6ZQF|1|D3|A|538, 6ZQF|1|D3|A|541, 6ZQF|1|D3|A|544
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6ZQF|1|D3|C|31
6ZQF|1|D3|U|32
6ZQF|1|D3|U|33
6ZQF|1|D3|G|34
6ZQF|1|D3|U|35
6ZQF|1|D3|C|36
6ZQF|1|D3|U|37
6ZQF|1|D3|C|38
6ZQF|1|D3|A|39
6ZQF|1|D3|A|40
6ZQF|1|D3|A|41
*
6ZQF|1|D3|U|466
6ZQF|1|D3|G|467
6ZQF|1|D3|A|468
6ZQF|1|D3|C|469
6ZQF|1|D3|A|470
6ZQF|1|D3|A|471
6ZQF|1|D3|U|472
6ZQF|1|D3|A|473
6ZQF|1|D3|A|474
6ZQF|1|D3|A|475
6ZQF|1|D3|U|476
6ZQF|1|D3|A|477
6ZQF|1|D3|A|478
6ZQF|1|D3|C|479
*
6ZQF|1|D3|G|509
6ZQF|1|D3|G|510
6ZQF|1|D3|A|511
6ZQF|1|D3|A|512
6ZQF|1|D3|U|513
6ZQF|1|D3|G|514
6ZQF|1|D3|A|515
6ZQF|1|D3|G|516
*
6ZQF|1|D3|C|536
6ZQF|1|D3|G|537
6ZQF|1|D3|A|538
6ZQF|1|D3|G|539
6ZQF|1|D3|G|540
6ZQF|1|D3|A|541
6ZQF|1|D3|A|542
6ZQF|1|D3|C|543
6ZQF|1|D3|A|544
6ZQF|1|D3|A|545
6ZQF|1|D3|U|546
*
6ZQF|1|D3|A|592
6ZQF|1|D3|U|593
6ZQF|1|D3|A|594
6ZQF|1|D3|G|595

Current chains

Chain D3: 18S rRNA

Nearby chains

Chain CL: Ribosome biogenesis protein BMS1
Chain DE: 40S ribosomal protein S4-A
Chain DJ: 40S ribosomal protein S9-A
Chain DX: 40S ribosomal protein S23-A
Chain UC: Something about silencing protein 10

J5_6ZQF_002