J5_6ZQF_005

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

6ZQF|1|D3|U|128, 6ZQF|1|D3|U|132, 6ZQF|1|D3|U|133, 6ZQF|1|D3|A|138, 6ZQF|1|D3|A|140, 6ZQF|1|D3|U|141, 6ZQF|1|D3|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQF|1|D3|A|124
6ZQF|1|D3|U|125
6ZQF|1|D3|A|126
6ZQF|1|D3|G|127
6ZQF|1|D3|U|128
6ZQF|1|D3|U|129
6ZQF|1|D3|C|130
6ZQF|1|D3|C|131
6ZQF|1|D3|U|132
6ZQF|1|D3|U|133
6ZQF|1|D3|U|134
6ZQF|1|D3|A|135
6ZQF|1|D3|C|136
6ZQF|1|D3|U|137
6ZQF|1|D3|A|138
6ZQF|1|D3|C|139
6ZQF|1|D3|A|140
6ZQF|1|D3|U|141
6ZQF|1|D3|G|142
6ZQF|1|D3|G|143
*
6ZQF|1|D3|C|172
6ZQF|1|D3|A|173
6ZQF|1|D3|U|174
6ZQF|1|D3|G|175
6ZQF|1|D3|C|176
6ZQF|1|D3|U|177
6ZQF|1|D3|U|178
6ZQF|1|D3|A|179
6ZQF|1|D3|A|180
6ZQF|1|D3|A|181
6ZQF|1|D3|A|182
*
6ZQF|1|D3|U|203
6ZQF|1|D3|G|204
*
6ZQF|1|D3|C|263
6ZQF|1|D3|G|264
6ZQF|1|D3|A|265
6ZQF|1|D3|A|266
6ZQF|1|D3|U|267
*
6ZQF|1|D3|A|288
6ZQF|1|D3|U|289
6ZQF|1|D3|G|290
6ZQF|1|D3|G|291
6ZQF|1|D3|U|292
6ZQF|1|D3|U|293

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DG

40S ribosomal protein S6-A