J5_6ZQF_006

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

6ZQF|1|D3|U|639, 6ZQF|1|D3|U|694, 6ZQF|1|D3|C|696, 6ZQF|1|D3|C|697, 6ZQF|1|D3|U|813, 6ZQF|1|D3|G|815, 6ZQF|1|D3|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQF|1|D3|A|636
6ZQF|1|D3|C|637
6ZQF|1|D3|U|638
6ZQF|1|D3|U|639
6ZQF|1|D3|U|640
6ZQF|1|D3|G|641
*
6ZQF|1|D3|U|693
6ZQF|1|D3|U|694
6ZQF|1|D3|U|695
6ZQF|1|D3|C|696
6ZQF|1|D3|C|697
6ZQF|1|D3|U|698
*
6ZQF|1|D3|A|740
6ZQF|1|D3|C|741
6ZQF|1|D3|U|742
6ZQF|1|D3|U|743
6ZQF|1|D3|U|744
*
6ZQF|1|D3|A|807
6ZQF|1|D3|U|808
6ZQF|1|D3|A|809
6ZQF|1|D3|G|810
6ZQF|1|D3|A|811
6ZQF|1|D3|A|812
6ZQF|1|D3|U|813
6ZQF|1|D3|A|814
6ZQF|1|D3|G|815
6ZQF|1|D3|G|816
6ZQF|1|D3|A|817
*
6ZQF|1|D3|U|854
6ZQF|1|D3|A|855
6ZQF|1|D3|A|856
6ZQF|1|D3|U|857
6ZQF|1|D3|G|858
6ZQF|1|D3|A|859
6ZQF|1|D3|U|860

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DH

40S ribosomal protein S7-A

Chain DL

40S ribosomal protein S11-A

Chain DN

40S ribosomal protein S13

Chain DW

40S ribosomal protein S22-A