J5_6ZSB_004

3D structure

PDB id

6ZSB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUUA*UUCG*CU*AG*CGGAACAA

Length

20 nucleotides

Bulged bases

6ZSB|1|XA|U|2739, 6ZSB|1|XA|G|2916, 6ZSB|1|XA|G|2917, 6ZSB|1|XA|A|2918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZSB_004 not in the Motif Atlas

Homologous match to J5_7A0S_007

Geometric discrepancy: 0.3266

The information below is about J5_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6ZSB|1|XA|U|2737
6ZSB|1|XA|U|2738
6ZSB|1|XA|U|2739
6ZSB|1|XA|A|2740
*
6ZSB|1|XA|U|2807
6ZSB|1|XA|U|2808
6ZSB|1|XA|C|2809
6ZSB|1|XA|G|2810
*
6ZSB|1|XA|C|2822
6ZSB|1|XA|U|2823
*
6ZSB|1|XA|A|2845
6ZSB|1|XA|G|2846
*
6ZSB|1|XA|C|2915
6ZSB|1|XA|G|2916
6ZSB|1|XA|G|2917
6ZSB|1|XA|A|2918
6ZSB|1|XA|A|2919
6ZSB|1|XA|C|2920
6ZSB|1|XA|A|2921
6ZSB|1|XA|A|2922

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 3

39S ribosomal protein L35, mitochondrial

Chain XD

39S ribosomal protein L2, mitochondrial

Chain XM

39S ribosomal protein L15, mitochondrial

Chain XW

39S ribosomal protein L27, mitochondrial

Chain XX

39S ribosomal protein L28, mitochondrial