J5_6ZU5_002

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUG*CGAC*GUUC*GC*GCAGAUC

Length

23 nucleotides

Bulged bases

6ZU5|1|L50|U|1144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZU5_002 not in the Motif Atlas

Homologous match to J5_8P9A_011

Geometric discrepancy: 0.0714

The information below is about J5_8P9A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_08384.1

Basepair signature

cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6ZU5|1|L50|G|490
6ZU5|1|L50|G|491
6ZU5|1|L50|A|492
6ZU5|1|L50|G|493
6ZU5|1|L50|U|494
6ZU5|1|L50|G|495
*
6ZU5|1|L50|C|553
6ZU5|1|L50|G|554
6ZU5|1|L50|A|555
6ZU5|1|L50|C|556
*
6ZU5|1|L50|G|695
6ZU5|1|L50|U|696
6ZU5|1|L50|U|697
6ZU5|1|L50|C|698
*
6ZU5|1|L50|G|1085
6ZU5|1|L50|C|1086
*
6ZU5|1|L50|G|1139
6ZU5|1|L50|C|1140
6ZU5|1|L50|A|1141
6ZU5|1|L50|G|1142
6ZU5|1|L50|A|1143
6ZU5|1|L50|U|1144
6ZU5|1|L50|C|1145

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LAA

uL15

Chain LC0

uL4

Chain LE0

eL6

Chain LEE

eL32

Chain LL0

eL13

Chain LN0

eL15