J5_6ZU5_003
3D structure
- PDB id
- 6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Paranosema locustae ribosome in complex with Lso2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAGCUGG*UG*UG*CUUCCAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6ZU5|1|L50|U|1601, 6ZU5|1|L50|G|1606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ZU5_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1124
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZU5|1|L50|G|1543
6ZU5|1|L50|C|1544
6ZU5|1|L50|A|1545
6ZU5|1|L50|A|1546
6ZU5|1|L50|G|1547
6ZU5|1|L50|C|1548
6ZU5|1|L50|U|1549
6ZU5|1|L50|G|1550
6ZU5|1|L50|G|1551
*
6ZU5|1|L50|U|1575
6ZU5|1|L50|G|1576
*
6ZU5|1|L50|U|1594
6ZU5|1|L50|G|1595
*
6ZU5|1|L50|C|1599
6ZU5|1|L50|U|1600
6ZU5|1|L50|U|1601
6ZU5|1|L50|C|1602
6ZU5|1|L50|C|1603
6ZU5|1|L50|A|1604
6ZU5|1|L50|A|1605
6ZU5|1|L50|G|1606
6ZU5|1|L50|G|1607
*
6ZU5|1|L50|C|1800
6ZU5|1|L50|A|1801
6ZU5|1|L50|C|1802
Current chains
- Chain L50
- 25S rRNA
Nearby chains
- Chain LB0
- uL3
- Chain LR0
- eL19
- Chain LV0
- uL14
- Chain LW0
- eL24
- Chain S60
- Small subunit ribosomal RNA; SSU rRNA
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