J5_6ZU9_003

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

6ZU9|1|2|U|128, 6ZU9|1|2|C|130, 6ZU9|1|2|U|132, 6ZU9|1|2|U|134, 6ZU9|1|2|A|140, 6ZU9|1|2|U|141, 6ZU9|1|2|U|178

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZU9|1|2|A|124
6ZU9|1|2|U|125
6ZU9|1|2|A|126
6ZU9|1|2|G|127
6ZU9|1|2|U|128
6ZU9|1|2|U|129
6ZU9|1|2|C|130
6ZU9|1|2|C|131
6ZU9|1|2|U|132
6ZU9|1|2|U|133
6ZU9|1|2|U|134
6ZU9|1|2|A|135
6ZU9|1|2|C|136
6ZU9|1|2|U|137
6ZU9|1|2|A|138
6ZU9|1|2|C|139
6ZU9|1|2|A|140
6ZU9|1|2|U|141
6ZU9|1|2|G|142
6ZU9|1|2|G|143
*
6ZU9|1|2|C|172
6ZU9|1|2|A|173
6ZU9|1|2|U|174
6ZU9|1|2|G|175
6ZU9|1|2|C|176
6ZU9|1|2|U|177
6ZU9|1|2|U|178
6ZU9|1|2|A|179
6ZU9|1|2|A|180
6ZU9|1|2|A|181
6ZU9|1|2|A|182
*
6ZU9|1|2|U|203
6ZU9|1|2|G|204
*
6ZU9|1|2|C|263
6ZU9|1|2|G|264
6ZU9|1|2|A|265
*
6ZU9|1|2|U|289
6ZU9|1|2|G|290
6ZU9|1|2|G|291
6ZU9|1|2|U|292
6ZU9|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A