J5_6ZU9_006

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

6ZU9|1|2|U|639, 6ZU9|1|2|U|694, 6ZU9|1|2|C|696, 6ZU9|1|2|C|697, 6ZU9|1|2|U|813, 6ZU9|1|2|G|815, 6ZU9|1|2|A|856

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZU9|1|2|A|636
6ZU9|1|2|C|637
6ZU9|1|2|U|638
6ZU9|1|2|U|639
6ZU9|1|2|U|640
6ZU9|1|2|G|641
*
6ZU9|1|2|U|693
6ZU9|1|2|U|694
6ZU9|1|2|U|695
6ZU9|1|2|C|696
6ZU9|1|2|C|697
6ZU9|1|2|U|698
*
6ZU9|1|2|A|740
6ZU9|1|2|C|741
6ZU9|1|2|U|742
6ZU9|1|2|U|743
6ZU9|1|2|U|744
*
6ZU9|1|2|A|807
6ZU9|1|2|U|808
6ZU9|1|2|A|809
6ZU9|1|2|G|810
6ZU9|1|2|A|811
6ZU9|1|2|A|812
6ZU9|1|2|U|813
6ZU9|1|2|A|814
6ZU9|1|2|G|815
6ZU9|1|2|G|816
6ZU9|1|2|A|817
*
6ZU9|1|2|U|854
6ZU9|1|2|A|855
6ZU9|1|2|A|856
6ZU9|1|2|U|857
6ZU9|1|2|G|858
6ZU9|1|2|A|859
6ZU9|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein S7-A

Chain X

40S ribosomal protein S11-A

Chain Y

40S ribosomal protein S13

Chain b

40S ribosomal protein S22-A