J5_6ZVI_002

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUG*CGAAUGGC*GAGGGA*UACCAC*GGCAG

Length

29 nucleotides

Bulged bases

6ZVI|1|h|A|93, 6ZVI|1|h|C|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVI|1|h|C|54
6ZVI|1|h|A|55
6ZVI|1|h|U|56
6ZVI|1|h|G|57
*
6ZVI|1|h|C|90
6ZVI|1|h|G|91
6ZVI|1|h|A|92
6ZVI|1|h|A|93
6ZVI|1|h|U|94
6ZVI|1|h|G|95
6ZVI|1|h|G|96
6ZVI|1|h|C|97
*
6ZVI|1|h|G|386
6ZVI|1|h|A|387
6ZVI|1|h|G|388
6ZVI|1|h|G|389
6ZVI|1|h|G|390
6ZVI|1|h|A|391
*
6ZVI|1|h|U|406
6ZVI|1|h|A|407
6ZVI|1|h|C|408
6ZVI|1|h|C|409
6ZVI|1|h|A|410
6ZVI|1|h|C|411
*
6ZVI|1|h|G|422
6ZVI|1|h|G|423
6ZVI|1|h|C|424
6ZVI|1|h|A|425
6ZVI|1|h|G|426

Current chains

Chain h

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S24-A

Chain m

40S ribosomal protein S4-A

Chain o

40S ribosomal protein S6-A

Chain q

40S ribosomal protein S8-A

Chain r

40S ribosomal protein S9-A