J5_6ZVI_004

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

6ZVI|1|h|U|128, 6ZVI|1|h|U|132, 6ZVI|1|h|U|134, 6ZVI|1|h|A|135, 6ZVI|1|h|A|140, 6ZVI|1|h|U|141, 6ZVI|1|h|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVI|1|h|A|124
6ZVI|1|h|U|125
6ZVI|1|h|A|126
6ZVI|1|h|G|127
6ZVI|1|h|U|128
6ZVI|1|h|U|129
6ZVI|1|h|C|130
6ZVI|1|h|C|131
6ZVI|1|h|U|132
6ZVI|1|h|U|133
6ZVI|1|h|U|134
6ZVI|1|h|A|135
6ZVI|1|h|C|136
6ZVI|1|h|U|137
6ZVI|1|h|A|138
6ZVI|1|h|C|139
6ZVI|1|h|A|140
6ZVI|1|h|U|141
6ZVI|1|h|G|142
6ZVI|1|h|G|143
*
6ZVI|1|h|C|172
6ZVI|1|h|A|173
6ZVI|1|h|U|174
6ZVI|1|h|G|175
6ZVI|1|h|C|176
6ZVI|1|h|U|177
6ZVI|1|h|U|178
6ZVI|1|h|A|179
6ZVI|1|h|A|180
6ZVI|1|h|A|181
6ZVI|1|h|A|182
*
6ZVI|1|h|U|203
6ZVI|1|h|G|204
*
6ZVI|1|h|C|263
6ZVI|1|h|G|264
6ZVI|1|h|A|265
6ZVI|1|h|A|266
6ZVI|1|h|U|267
*
6ZVI|1|h|A|288
6ZVI|1|h|U|289
6ZVI|1|h|G|290
6ZVI|1|h|G|291
6ZVI|1|h|U|292
6ZVI|1|h|U|293

Current chains

Chain h

18S rRNA

Nearby chains

Chain m

40S ribosomal protein S4-A

Chain o

40S ribosomal protein S6-A

Chain q

40S ribosomal protein S8-A