J5_6ZVI_005

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUUUGG*CUUUCCUU*GGACUUU*AUAGAAUAGGA*UAAUGAU

Length

40 nucleotides

Bulged bases

6ZVI|1|h|U|639, 6ZVI|1|h|U|640, 6ZVI|1|h|G|641, 6ZVI|1|h|C|697, 6ZVI|1|h|U|742, 6ZVI|1|h|U|813, 6ZVI|1|h|G|815, 6ZVI|1|h|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVI|1|h|A|636
6ZVI|1|h|C|637
6ZVI|1|h|U|638
6ZVI|1|h|U|639
6ZVI|1|h|U|640
6ZVI|1|h|G|641
6ZVI|1|h|G|642
*
6ZVI|1|h|C|692
6ZVI|1|h|U|693
6ZVI|1|h|U|694
6ZVI|1|h|U|695
6ZVI|1|h|C|696
6ZVI|1|h|C|697
6ZVI|1|h|U|698
6ZVI|1|h|U|699
*
6ZVI|1|h|G|738
6ZVI|1|h|G|739
6ZVI|1|h|A|740
6ZVI|1|h|C|741
6ZVI|1|h|U|742
6ZVI|1|h|U|743
6ZVI|1|h|U|744
*
6ZVI|1|h|A|807
6ZVI|1|h|U|808
6ZVI|1|h|A|809
6ZVI|1|h|G|810
6ZVI|1|h|A|811
6ZVI|1|h|A|812
6ZVI|1|h|U|813
6ZVI|1|h|A|814
6ZVI|1|h|G|815
6ZVI|1|h|G|816
6ZVI|1|h|A|817
*
6ZVI|1|h|U|854
6ZVI|1|h|A|855
6ZVI|1|h|A|856
6ZVI|1|h|U|857
6ZVI|1|h|G|858
6ZVI|1|h|A|859
6ZVI|1|h|U|860

Current chains

Chain h

18S rRNA

Nearby chains

Chain E

RPS22A isoform 1

Chain m

40S ribosomal protein S4-A

Chain p

40S ribosomal protein S7-A

Chain t

40S ribosomal protein S11-A

Chain v

40S ribosomal protein S13