J5_6ZVK_006
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 6ZVK|1|e2|G|1517, 6ZVK|1|e2|C|2289, 6ZVK|1|e2|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ZVK_006 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.4367
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|e2|G|1335
6ZVK|1|e2|G|1336
6ZVK|1|e2|A|1337
6ZVK|1|e2|G|1338
6ZVK|1|e2|U|1339
6ZVK|1|e2|C|1340
*
6ZVK|1|e2|G|1516
6ZVK|1|e2|G|1517
6ZVK|1|e2|A|1518
6ZVK|1|e2|C|1519
*
6ZVK|1|e2|G|1658
6ZVK|1|e2|U|1659
6ZVK|1|e2|U|1660
6ZVK|1|e2|C|1661
*
6ZVK|1|e2|G|2288
6ZVK|1|e2|C|2289
6ZVK|1|e2|C|2290
*
6ZVK|1|e2|G|2345
6ZVK|1|e2|C|2346
6ZVK|1|e2|A|2347
6ZVK|1|e2|G|2348
6ZVK|1|e2|A|2349
6ZVK|1|e2|U|2350
6ZVK|1|e2|C|2351
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain J2
- 60S RIBOSOMAL PROTEIN EL28
- Chain a7
- 60S ribosomal protein L13
- Chain h2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain q2
- uL15
- Chain t2
- uL4
- Chain v2
- eL32
Coloring options: