J5_6ZXE_002

3D structure

PDB id

6ZXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

6ZXE|1|2|A|590, 6ZXE|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXE|1|2|C|30
6ZXE|1|2|U|31
6ZXE|1|2|U|32
6ZXE|1|2|G|33
6ZXE|1|2|U|34
*
6ZXE|1|2|A|521
6ZXE|1|2|A|522
6ZXE|1|2|A|523
6ZXE|1|2|U|524
6ZXE|1|2|A|525
6ZXE|1|2|A|526
6ZXE|1|2|C|527
*
6ZXE|1|2|G|558
6ZXE|1|2|G|559
6ZXE|1|2|A|560
6ZXE|1|2|A|561
6ZXE|1|2|U|562
6ZXE|1|2|G|563
6ZXE|1|2|A|564
6ZXE|1|2|G|565
*
6ZXE|1|2|C|585
6ZXE|1|2|G|586
6ZXE|1|2|A|587
6ZXE|1|2|G|588
6ZXE|1|2|G|589
6ZXE|1|2|A|590
6ZXE|1|2|U|591
6ZXE|1|2|C|592
6ZXE|1|2|C|593
6ZXE|1|2|A|594
6ZXE|1|2|U|595
*
6ZXE|1|2|A|641
6ZXE|1|2|U|642
6ZXE|1|2|A|643
6ZXE|1|2|G|644

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30