J5_6ZXF_005

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

6ZXF|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZXF_005 not in the Motif Atlas

Homologous match to J5_8CRE_018

Geometric discrepancy: 0.1121

The information below is about J5_8CRE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_04786.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ZXF|1|2|C|30
6ZXF|1|2|U|31
6ZXF|1|2|U|32
6ZXF|1|2|G|33
6ZXF|1|2|U|34
*
6ZXF|1|2|A|521
6ZXF|1|2|A|522
6ZXF|1|2|A|523
6ZXF|1|2|U|524
6ZXF|1|2|A|525
6ZXF|1|2|A|526
6ZXF|1|2|C|527
*
6ZXF|1|2|G|558
6ZXF|1|2|G|559
6ZXF|1|2|A|560
6ZXF|1|2|A|561
6ZXF|1|2|U|562
6ZXF|1|2|G|563
*
6ZXF|1|2|C|592
6ZXF|1|2|C|593
6ZXF|1|2|A|594
6ZXF|1|2|U|595
*
6ZXF|1|2|A|641
6ZXF|1|2|U|642
6ZXF|1|2|A|643
6ZXF|1|2|G|644

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30