J5_7A01_002
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7A01|1|K3|A|92, 7A01|1|K3|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7A01_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.2108
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7A01|1|K3|C|53
7A01|1|K3|A|54
7A01|1|K3|U|55
7A01|1|K3|G|56
*
7A01|1|K3|C|89
7A01|1|K3|G|90
7A01|1|K3|A|91
7A01|1|K3|A|92
7A01|1|K3|U|93
7A01|1|K3|G|94
7A01|1|K3|G|95
7A01|1|K3|C|96
*
7A01|1|K3|G|434
7A01|1|K3|A|435
7A01|1|K3|G|436
*
7A01|1|K3|C|457
7A01|1|K3|A|458
7A01|1|K3|C|459
*
7A01|1|K3|G|470
7A01|1|K3|G|471
7A01|1|K3|C|472
7A01|1|K3|A|473
7A01|1|K3|G|474
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain I5
- 40S ribosomal protein S24
- Chain b3
- 40S ribosomal protein S6
- Chain c3
- 40S ribosomal protein S8
- Chain d3
- Ribosomal protein S9 (Predicted)
- Chain j3
- 40S ribosomal protein S4,40S ribosomal protein S4
- Chain k2
- eL14
Coloring options: