J5_7A01_005
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 7A01|1|h2|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7A01_005 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1236
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7A01|1|e2|G|19
7A01|1|e2|U|20
7A01|1|e2|G|21
*
7A01|1|h2|C|35
7A01|1|h2|G|36
7A01|1|h2|A|37
7A01|1|h2|U|38
7A01|1|h2|G|39
7A01|1|h2|A|40
7A01|1|h2|A|41
7A01|1|h2|G|42
*
7A01|1|h2|C|101
7A01|1|h2|G|102
7A01|1|h2|A|103
7A01|1|h2|A|104
7A01|1|h2|C|105
7A01|1|h2|G|106
*
7A01|1|h2|C|113
7A01|1|h2|G|114
*
7A01|1|h2|U|136
7A01|1|h2|A|137
7A01|1|h2|C|138
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
- Chain h2
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain A2
- uL29
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
- Chain m2
- Uncharacterized protein
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