J5_7A0S_003

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CAG*CGUGC*GAG*CA*UG

Length

15 nucleotides

Bulged bases

7A0S|1|X|A|542, 7A0S|1|X|U|571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7A0S|1|X|C|541
7A0S|1|X|A|542
7A0S|1|X|G|543
*
7A0S|1|X|C|569
7A0S|1|X|G|570
7A0S|1|X|U|571
7A0S|1|X|G|572
7A0S|1|X|C|573
*
7A0S|1|X|G|586
7A0S|1|X|A|587
7A0S|1|X|G|588
*
7A0S|1|X|C|1274
7A0S|1|X|A|1275
*
7A0S|1|X|U|2000
7A0S|1|X|G|2001

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain C

50S ribosomal protein L4

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32