J5_7A0S_006

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

7A0S|1|X|A|2045, 7A0S|1|X|A|2427, 7A0S|1|X|U|2428, 7A0S|1|X|U|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_15259.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-cWW-cWW-F-F-F-F-tHW-F-F-F-cWW-cWW-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

7A0S|1|X|A|2040
7A0S|1|X|A|2041
7A0S|1|X|A|2042
7A0S|1|X|A|2043
7A0S|1|X|G|2044
7A0S|1|X|A|2045
7A0S|1|X|C|2046
7A0S|1|X|C|2047
*
7A0S|1|X|G|2425
7A0S|1|X|G|2426
7A0S|1|X|A|2427
7A0S|1|X|U|2428
7A0S|1|X|A|2429
7A0S|1|X|A|2430
7A0S|1|X|C|2431
7A0S|1|X|A|2432
*
7A0S|1|X|U|2479
7A0S|1|X|C|2480
7A0S|1|X|G|2481
7A0S|1|X|A|2482
7A0S|1|X|U|2483
7A0S|1|X|G|2484
7A0S|1|X|U|2485
7A0S|1|X|C|2486
*
7A0S|1|X|G|2561
7A0S|1|X|G|2562
7A0S|1|X|U|2563
7A0S|1|X|U|2564
7A0S|1|X|C|2565
7A0S|1|X|A|2566
7A0S|1|X|G|2567
*
7A0S|1|X|C|2585
7A0S|1|X|G|2586
7A0S|1|X|G|2587
7A0S|1|X|U|2588
7A0S|1|X|C|2589
7A0S|1|X|U|2590

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain J

50S ribosomal protein L16

Chain Z

50S ribosomal protein L32